Package: markerpen
Type: Package
Title: Marker Gene Detection via Penalized Principal Component Analysis
Version: 0.1.2
Date: 2025-12-14
Authors@R: c(
    person("Yixuan", "Qiu",
           email = "yixuan.qiu@cos.name",
           role = c("aut", "cre")),
    person("Jiebiao", "Wang", role = "aut"),
    person("Jing", "Lei", role = "aut"),
    person("Kathryn", "Roeder", role = "aut"))
Description: Implementation of the 'MarkerPen' algorithm, short for
        marker gene detection via penalized principal component
        analysis, described in the paper by Qiu, Wang, Lei, and Roeder
        (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a
        semi-supervised algorithm for detecting marker genes by
        combining prior marker information with bulk transcriptome
        data.
License: GPL
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.3.0)
Imports: Rcpp (>= 1.0.1), RSpectra, stats
LinkingTo: Rcpp, RcppEigen, RSpectra
Suggests: knitr, rmarkdown, prettydoc, scales
VignetteBuilder: knitr, rmarkdown
RoxygenNote: 7.3.2
Repository: https://yixuan.r-universe.dev
Date/Publication: 2025-12-14 12:33:32 UTC
RemoteUrl: https://github.com/yixuan/markerpen
RemoteRef: HEAD
RemoteSha: b521abf5ef3ff9d9cc23253559d45ed6478c1979
NeedsCompilation: yes
Packaged: 2026-06-12 10:55:28 UTC; root
Author: Yixuan Qiu [aut, cre],
  Jiebiao Wang [aut],
  Jing Lei [aut],
  Kathryn Roeder [aut]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>