Package: markerpen 0.1.1
markerpen: Marker Gene Detection via Penalized Principal Component Analysis
Implementation of the 'MarkerPen' algorithm, short for marker gene detection via penalized principal component analysis, described in the paper by Qiu, Wang, Lei, and Roeder (2020, <doi:10.1101/2020.11.07.373043>). 'MarkerPen' is a semi-supervised algorithm for detecting marker genes by combining prior marker information with bulk transcriptome data.
Authors:
markerpen_0.1.1.tar.gz
markerpen_0.1.1.zip(r-4.5)markerpen_0.1.1.zip(r-4.4)markerpen_0.1.1.zip(r-4.3)
markerpen_0.1.1.tgz(r-4.4-x86_64)markerpen_0.1.1.tgz(r-4.4-arm64)markerpen_0.1.1.tgz(r-4.3-x86_64)markerpen_0.1.1.tgz(r-4.3-arm64)
markerpen_0.1.1.tar.gz(r-4.5-noble)markerpen_0.1.1.tar.gz(r-4.4-noble)
markerpen_0.1.1.tgz(r-4.4-emscripten)markerpen_0.1.1.tgz(r-4.3-emscripten)
markerpen.pdf |markerpen.html✨
markerpen/json (API)
NEWS
| # Install 'markerpen' in R: |
| install.packages('markerpen', repos = c('https://yixuan.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yixuan/markerpen/issues
- gene_mapping - Mapping gene names to Ensembl IDs
Last updated 4 years agofrom:8bed7e05b9. Checks:1 OK, 8 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 05 2025 |
| R-4.5-win-x86_64 | NOTE | Jan 05 2025 |
| R-4.5-linux-x86_64 | NOTE | Jan 05 2025 |
| R-4.4-win-x86_64 | NOTE | Jan 05 2025 |
| R-4.4-mac-x86_64 | NOTE | Jan 05 2025 |
| R-4.4-mac-aarch64 | NOTE | Jan 05 2025 |
| R-4.3-win-x86_64 | NOTE | Jan 05 2025 |
| R-4.3-mac-x86_64 | NOTE | Jan 05 2025 |
| R-4.3-mac-aarch64 | NOTE | Jan 05 2025 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Mapping gene names to Ensembl IDs | gene_mapping |
| Penalized Principal Component Analysis for Marker Gene Selection | pca_pen |
| Marker Gene Selection via Penalized Principal Component Analysis | refine_markers |
| Post-processing Selected Marker Genes | sort_markers |
