Package: markerpen 0.1.2

markerpen: Marker Gene Detection via Penalized Principal Component Analysis

Implementation of the 'MarkerPen' algorithm, short for marker gene detection via penalized principal component analysis, described in the paper by Qiu, Wang, Lei, and Roeder (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a semi-supervised algorithm for detecting marker genes by combining prior marker information with bulk transcriptome data.

Authors:Yixuan Qiu [aut, cre], Jiebiao Wang [aut], Jing Lei [aut], Kathryn Roeder [aut]

markerpen_0.1.2.tar.gz
markerpen_0.1.2.zip(r-4.7)markerpen_0.1.2.zip(r-4.6)markerpen_0.1.2.zip(r-4.5)
markerpen_0.1.2.tgz(r-4.6-x86_64)markerpen_0.1.2.tgz(r-4.6-arm64)markerpen_0.1.2.tgz(r-4.5-x86_64)markerpen_0.1.2.tgz(r-4.5-arm64)
markerpen_0.1.2.tar.gz(r-4.7-arm64)markerpen_0.1.2.tar.gz(r-4.7-x86_64)markerpen_0.1.2.tar.gz(r-4.6-arm64)markerpen_0.1.2.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
markerpen/json (API)
NEWS

# Install 'markerpen' in R:
install.packages('markerpen', repos = c('https://yixuan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yixuan/markerpen/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

openblascppopenmp

4.48 score 6 stars 3 scripts 220 downloads 3 exports 5 dependencies

Last updated from:b521abf5ef. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK182
linux-devel-x86_64OK157
source / vignettesOK186
linux-release-arm64OK142
linux-release-x86_64OK173
macos-release-arm64OK98
macos-release-x86_64OK286
macos-oldrel-arm64OK111
macos-oldrel-x86_64OK231
windows-develOK172
windows-releaseOK132
windows-oldrelOK192
wasm-releaseFAIL112

Exports:pca_penrefine_markerssort_markers

Dependencies:latticeMatrixRcppRcppEigenRSpectra

MarkerPen: Marker Gene Detection via Penalized Principal Component Analysis

Yixuan Qiu, Jiebiao Wang, Jing Lei, and Kathryn Roeder

Rendered fromintroduction.Rmdusingknitr::rmarkdownon May 13 2026.

Last update: 2025-12-14
Started: 2021-02-28